Shanlin Ke (柯善林), PhD

Shanlin Ke (柯善林), PhD

Publications

Association of Post-Traumatic Stress Disorder with Dietary Pattern and Gut Microbiome in a Cohort of Women

Published in Nature Mental Health, 2023

This paper is about the analyses on trauma exposure and PTSD symptoms with gut microbiome data and dietary information of 191 individuals enrolled in a substudy of an ongoing longitudinal cohort of women.

Recommended citation: Ke S., Wang X, Ratanatharathorn A, Huang T, Roberts A, Grodstein F, Kubzansky L, Koenen KC, Liu Y. Association of Post-Traumatic Stress Disorder with Dietary Pattern and Gut Microbiome in a Cohort of Women. 2023, Nature Mental Health, doi: 10.1038/s44220-023-00145-6. https://doi.org/10.1038/s44220-023-00145-6

A Computational Method to Dissect Colonization Resistance of the Gut Microbiota against Pathogens

Published in Cell Reports Methods, 2023

This paper is about a computational framework for identifying candidate causal microbes that directly influence the microbiota-mediated colonization resistance against a pathogen.

Recommended citation: Ke S*, Xiao Y*, Weiss ST, Chen X, Kelly CP, Liu Y.Y. A Computational Method to Dissect Colonization Resistance of the Gut Microbiota against Pathogens. 2023, doi: 10.1016/j.crmeth.2023.100576. Cell Reports Methods (* indicates co-first authors). https://doi.org/10.1016/j.crmeth.2023.100576

Dissecting the role of the human microbiome in COVID-19 via metagenome-assembled genomes

Published in Nature Communications, 2022

This paper is about the the importance of incorporating the human gut microbiome in our understanding of SARS-CoV-2 infection and disease progression

Recommended citation: Ke S., Weiss S.T., Liu Y.Y. Dissecting the Role of the Human Microbiome in COVID-19 via Metagenome-assembled Genomes. Nature Communications, doi: 10.1038/s41467-022-32991-w. PMID: 36068270. https://doi.org/10.1038/s41467-022-32991-w