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publications
Dissecting the role of the human microbiome in COVID-19 via metagenome-assembled genomes
Published in Nature Communications, 2022
This paper is about the the importance of incorporating the human gut microbiome in our understanding of SARS-CoV-2 infection and disease progression
Recommended citation: Ke S., Weiss S.T., Liu Y.Y. Dissecting the Role of the Human Microbiome in COVID-19 via Metagenome-assembled Genomes. Nature Communications, doi: 10.1038/s41467-022-32991-w. PMID: 36068270. https://doi.org/10.1038/s41467-022-32991-w
Role of the Gut Microbiome in Posttraumatic Stress Disorder
Published in Brain, Behavior, and Immunity, 2023
This paper is about the methodological limitations of existing studies and suggests future research directions further to understand the role of the gut microbiome in PTSD
Recommended citation: Ke S., Liu Y, Koenen KC. Role of the Gut Microbiome in Posttraumatic Stress Disorder. 2023, Brain Behavior and Immunity, doi: 10.1016/j.bbi.2023.09.005. https://doi.org/10.1016/j.bbi.2023.09.005
A Computational Method to Dissect Colonization Resistance of the Gut Microbiota against Pathogens
Published in Cell Reports Methods, 2023
This paper is about a computational framework for identifying candidate causal microbes that directly influence the microbiota-mediated colonization resistance against a pathogen.
Recommended citation: Ke S*, Xiao Y*, Weiss ST, Chen X, Kelly CP, Liu Y.Y. A Computational Method to Dissect Colonization Resistance of the Gut Microbiota against Pathogens. 2023, doi: 10.1016/j.crmeth.2023.100576. Cell Reports Methods (* indicates co-first authors). https://doi.org/10.1016/j.crmeth.2023.100576
Association of Post-Traumatic Stress Disorder with Dietary Pattern and Gut Microbiome in a Cohort of Women
Published in Nature Mental Health, 2023
This paper is about the analyses on trauma exposure and PTSD symptoms with gut microbiome data and dietary information of 191 individuals enrolled in a substudy of an ongoing longitudinal cohort of women.
Recommended citation: Ke S., Wang X, Ratanatharathorn A, Huang T, Roberts A, Grodstein F, Kubzansky L, Koenen KC, Liu Y. Association of Post-Traumatic Stress Disorder with Dietary Pattern and Gut Microbiome in a Cohort of Women. 2023, Nature Mental Health, doi: 10.1038/s44220-023-00145-6. https://doi.org/10.1038/s44220-023-00145-6
talks
Rejuvenating the Human Gut Microbiome
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teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
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Teaching experience 2
Workshop, University 1, Department, 2015
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